FACULTY OF ENGINEERING
Department of Genetics and Bioengineering
BME 404 | Course Introduction and Application Information
| Course Name |
Biomedical Image Processing
|
|
Code
|
Semester
|
Theory
(hour/week) |
Application/Lab
(hour/week) |
Local Credits
|
ECTS
|
|
BME 404
|
Fall/Spring
|
2
|
2
|
3
|
5
|
| Prerequisites |
None
|
|||||
| Course Language |
English
|
|||||
| Course Type |
Elective
|
|||||
| Course Level |
First Cycle
|
|||||
| Mode of Delivery | - | |||||
| Teaching Methods and Techniques of the Course | - | |||||
| Course Coordinator | ||||||
| Course Lecturer(s) | ||||||
| Assistant(s) | - | |||||
| Course Objectives | The aim of this course is to provide students with a knowledge and understanding of fundamental principles of medical image enhancement, registration, classification, and segmentation. |
| Learning Outcomes |
The students who succeeded in this course;
|
| Course Description | Principles of acquisition, storage, visualization, and processing of medical image data. Sampling and quantization. Picture archiving and communication systems, Medical image formats. Basic and advanced image processing algorithms. |
|
|
Core Courses | |
| Major Area Courses | ||
| Supportive Courses | ||
| Media and Management Skills Courses | ||
| Transferable Skill Courses |
WEEKLY SUBJECTS AND RELATED PREPARATION STUDIES
| Week | Subjects | Related Preparation |
| 1 | Introduction and Overview | Lecture notes |
| 2 | Medical Imaging Technology | Chp 1, 6-8. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.1, SPIE Press |
| 3 | Medical Image Acquisition, Sampling, and Quantization | Lecture notes |
| 4 | Medical Image Storage, Archiving and Communication Systems and Formats | Chp 8-9. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.3, SPIE Press |
| 5 | Medical Image Processing, Enhancement, Filtering | Chp 4-5. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 6 | Medical Image Segmentation - I | Chp 2-3. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 7 | Medical Image Segmentation - II | Chp 2-3. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 8 | Review and Midterm Examination | |
| 9 | Medical Image Registration - I | Chp 8. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 10 | Medical Image Registration - II | Chp 8. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 11 | Medical Image Visualization | Chp 1. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.3, SPIE Press |
| 12 | Medical Image Compression | Lecture notes |
| 13 | Medical Image Search and Retrieval | Lecture notes |
| 14 | Other Applications of Medical Image Analysis | Lecture notes |
| 15 | Evaluation of Term Projects | |
| 16 | Final |
| Course Notes/Textbooks | Handbook of Medical Imaging, Medical Image Processing and Analysis (2009) by Milan Sonka and J. Michael Fitzpatrick, SPIE Press, ISBN: 0819477605. |
| Suggested Readings/Materials | Biomedical Signal and Image Processing (2005) by Kayvan Najarian and Robert Splinter, CRC Press, ISBN: 0849320992.\\nDigital Image Processing for Medical Applications (2009) by Geoff Dougherty, Cambridge Univ. Press, ISBN: 0521860857.\\nMedical Imaging Signals and Systems (2005) by Jerry L. Prince and Jonathan Links, Pearson, ISBN: 0130653535.\\nBiosignal and Medical Image Processing (2008) by John L. Semmlow, CRC Press, ISBN: 1420062301. Lecture slides will be distributed as softcopy. |
EVALUATION SYSTEM
| Semester Activities | Number | Weigthing |
| Participation | ||
| Laboratory / Application |
4
|
20
|
| Field Work | ||
| Quizzes / Studio Critiques | ||
| Portfolio | ||
| Homework / Assignments | ||
| Presentation / Jury |
1
|
5
|
| Project |
1
|
15
|
| Seminar / Workshop | ||
| Oral Exams | ||
| Midterm |
1
|
20
|
| Final Exam |
1
|
40
|
| Total |
| Weighting of Semester Activities on the Final Grade |
60
|
|
| Weighting of End-of-Semester Activities on the Final Grade |
40
|
|
| Total |
ECTS / WORKLOAD TABLE
| Semester Activities | Number | Duration (Hours) | Workload |
|---|---|---|---|
| Theoretical Course Hours (Including exam week: 16 x total hours) |
16
|
2
|
32
|
| Laboratory / Application Hours (Including exam week: '.16.' x total hours) |
16
|
2
|
32
|
| Study Hours Out of Class |
16
|
2
|
32
|
| Field Work |
0
|
||
| Quizzes / Studio Critiques |
0
|
||
| Portfolio |
0
|
||
| Homework / Assignments |
0
|
||
| Presentation / Jury |
1
|
12
|
12
|
| Project |
1
|
12
|
12
|
| Seminar / Workshop |
0
|
||
| Oral Exam |
0
|
||
| Midterms |
1
|
12
|
12
|
| Final Exam |
1
|
18
|
18
|
| Total |
150
|
COURSE LEARNING OUTCOMES AND PROGRAM QUALIFICATIONS RELATIONSHIP
|
#
|
Program Competencies/Outcomes |
* Contribution Level
|
||||
|
1
|
2
|
3
|
4
|
5
|
||
| 1 | To have adequate knowledge in Mathematics, Science and Genetics and Bioengineering; to be able to use theoretical and applied information in these areas on complex engineering problems. |
|||||
| 2 | To be able to identify, define, formulate, and solve complex Genetics and Bioengineering problems; to be able to select and apply proper analysis and modeling methods for this purpose. |
|||||
| 3 | To be able to design a complex system, process, device or product under realistic constraints and conditions, in such a way as to meet the requirements; to be able to apply modern design methods for this purpose. |
|||||
| 4 | To be able to devise, select, and use modern techniques and tools needed for analysis and solution of complex problems in Genetics and Bioengineering applications; to be able to use information technologies effectively. |
|||||
| 5 | To be able to design and conduct experiments, gather data, analyze and interpret results for investigating complex engineering problems or Genetics and Bioengineering research topics. |
|||||
| 6 | To be able to work efficiently in Genetics and Bioengineering disciplinary and multi-disciplinary teams; to be able to work individually. |
|||||
| 7 | To be able to communicate effectively in Turkish, both orally and in writing; to be able to author and comprehend written reports, to be able to prepare design and implementation reports, to present effectively, to be able to give and receive clear and comprehensible instructions. |
|||||
| 8 | To have knowledge about global and social impact of Genetics and Bioengineering practices on health, environment, and safety; to have knowledge about contemporary issues as they pertain to engineering; to be aware of the legal ramifications of Genetics and Bioengineering solutions. |
|||||
| 9 | To be aware of ethical behavior, professional and ethical responsibility; to have knowledge about standards utilized in Genetics and Bioengineering applications. |
|||||
| 10 | To have knowledge about industrial practices such as project management, risk management, and change management; to have awareness of entrepreneurship and innovation; to have knowledge about sustainable development. |
|||||
| 11 | To be able to collect data in the area of Genetics and Bioengineering, and to be able to communicate with colleagues in a foreign language. |
|||||
| 12 | To be able to speak a second foreign language at a medium level of fluency efficiently. |
|||||
| 13 | To recognize the need for lifelong learning; to be able to access information, to be able to stay current with developments in science and technology; to be able to relate the knowledge accumulated throughout the human history to Genetics and Bioengineering. |
|||||
*1 Lowest, 2 Low, 3 Average, 4 High, 5 Highest
NEWS |ALL NEWS
Elderly’s quality of life will increase
4 scientists from Izmir University of Economics (IUE) have begun work on developing a drug aimed at treating osteoarthritis, a disease mostly
Germany chose Ezgi
Ezgi Kaya, who graduated from Izmir University of Economics (IUE) Department of Genetics and Bioengineering this year, was accepted to the world-famous
Geneticists’ success in ‘Germany’
Nine newly graduated students from Izmir University of Economics (IUE) Department of Genetics and Bioengineering achieved great success by being accepted to
'Sustainable energy' ideas from students
Izmir University of Economics (IUE) organized a workshop on biohydrogen, which is used in many fields from industry to transportation and stands
Discovery in thermal spring
Asst. Prof. Dr. Mine Güngörmüşler from Izmir University of Economics (IUE), Department of Genetics and Bioengineering, and two graduate students examined the
Arda ranked among 7 people in the world
Arda Kıpçak, who graduated from Department of Genetics and Bioengineering, Izmir University of Economics (IUE) this year, was accepted to the world-renowned
'Smart cabinet' against the virus
Assoc. Prof. Dr. Osman Doluca and his 4 students from Izmir University of Economics (IUE) developed a 'PCR cabinet' that allows samples