FACULTY OF ENGINEERING

Department of Genetics and Bioengineering

BME 405 | Course Introduction and Application Information

Course Name
Biomedical Optics
Code
Semester
Theory
(hour/week)
Application/Lab
(hour/week)
Local Credits
ECTS
BME 405
Fall/Spring
2
2
3
5

Prerequisites
None
Course Language
English
Course Type
Elective
Course Level
First Cycle
Mode of Delivery -
Teaching Methods and Techniques of the Course -
Course Coordinator
Course Lecturer(s) -
Assistant(s) -
Course Objectives The objective of this course is to introduce the basics of light and optic elements. The course focuses on, light emission (IR, UV, lasers) as well as related equipment (lenses, fiberoptics, detectors) and their uses in biomedical engineering.
Learning Outcomes The students who succeeded in this course;
  • Define the main principles and concepts of biomedical optics
  • List the types of light sources
  • Define reasons for their usage
  • Decide which optical elements and light sources are required for a device
  • Calculate the amount of light projected on detector surface
Course Description The course contains lectures and practical case studies on various light sources as well as optical elements commonly used in bimedical engineering field.

 



Course Category

Core Courses
Major Area Courses
Supportive Courses
Media and Management Skills Courses
Transferable Skill Courses

 

WEEKLY SUBJECTS AND RELATED PREPARATION STUDIES

Week Subjects Related Preparation
1 General behavior of light Chp 1.1-1.2. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
2 Basic light physics Chp 1.3. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
3 Absorption & Scattering in biological materials Chp 1.4-1.5. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
4 Image characterization Chp 1.8. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
5 Rayleigh & Mie theories Chp 2. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
6 Light sources – collimated Chp 7. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
7 Beer – Lambert law Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
8 Midterm
9 Light sources – non collimated Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
10 Law of inverse squares Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
11 Refraction & refractive indices Chp 5. Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007
12 Total internal reflection and optical fibres
13 Spectroscopy - I
14 Spectroscopy - II
15 Review
16 Final Exam

 

Course Notes/Textbooks Biomedical Optics: Principles and Imaging, Lihong V. Wang, Hsin-i Wu, Wiley, June 2007 Course slides
Suggested Readings/Materials

 

EVALUATION SYSTEM

Semester Activities Number Weigthing
Participation
Laboratory / Application
Field Work
Quizzes / Studio Critiques
Portfolio
Homework / Assignments
4
20
Presentation / Jury
Project
Seminar / Workshop
Oral Exams
Midterm
1
40
Final Exam
1
40
Total

Weighting of Semester Activities on the Final Grade
5
75
Weighting of End-of-Semester Activities on the Final Grade
1
25
Total

ECTS / WORKLOAD TABLE

Semester Activities Number Duration (Hours) Workload
Theoretical Course Hours
(Including exam week: 16 x total hours)
16
2
32
Laboratory / Application Hours
(Including exam week: '.16.' x total hours)
16
2
32
Study Hours Out of Class
16
2
32
Field Work
0
Quizzes / Studio Critiques
0
Portfolio
0
Homework / Assignments
4
5
20
Presentation / Jury
0
Project
0
Seminar / Workshop
0
Oral Exam
0
Midterms
1
16
16
Final Exam
1
18
18
    Total
150

 

COURSE LEARNING OUTCOMES AND PROGRAM QUALIFICATIONS RELATIONSHIP

#
Program Competencies/Outcomes
* Contribution Level
1
2
3
4
5
1

To have adequate knowledge in Mathematics, Science and Genetics and Bioengineering; to be able to use theoretical and applied information in these areas on complex engineering problems.

2

To be able to identify, define, formulate, and solve complex Genetics and Bioengineering problems; to be able to select and apply proper analysis and modeling methods for this purpose.

3

To be able to design a complex system, process, device or product under realistic constraints and conditions, in such a way as to meet the requirements; to be able to apply modern design methods for this purpose.

4

To be able to devise, select, and use modern techniques and tools needed for analysis and solution of complex problems in Genetics and Bioengineering applications; to be able to use information technologies effectively.

5

To be able to design and conduct experiments, gather data, analyze and interpret results for investigating complex engineering problems or Genetics and Bioengineering research topics.

6

To be able to work efficiently in Genetics and Bioengineering disciplinary and multi-disciplinary teams; to be able to work individually.

7

To be able to communicate effectively in Turkish, both orally and in writing; to be able to author and comprehend written reports, to be able to prepare design and implementation reports, to present effectively, to be able to give and receive clear and comprehensible instructions.

8

To have knowledge about global and social impact of Genetics and Bioengineering practices on health, environment, and safety; to have knowledge about contemporary issues as they pertain to engineering; to be aware of the legal ramifications of Genetics and Bioengineering solutions.

9

To be aware of ethical behavior, professional and ethical responsibility; to have knowledge about standards utilized in Genetics and Bioengineering applications.

10

To have knowledge about industrial practices such as project management, risk management, and change management; to have awareness of entrepreneurship and innovation; to have knowledge about sustainable development.

11

To be able to collect data in the area of Genetics and Bioengineering, and to be able to communicate with colleagues in a foreign language.

12

To be able to speak a second foreign language at a medium level of fluency efficiently.

13

To recognize the need for lifelong learning; to be able to access information, to be able to stay current with developments in science and technology; to be able to relate the knowledge accumulated throughout the human history to Genetics and Bioengineering.

*1 Lowest, 2 Low, 3 Average, 4 High, 5 Highest

 


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