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      FACULTY OF ENGINEERING

      Department of Genetics and Bioengineering

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      GBE 303 | Course Introduction and Application Information

      Course Name
      Biotransport Phenomena
      Code
      Semester
      Theory
      (hour/week)
      Application/Lab
      (hour/week)
      Local Credits
      ECTS
      GBE 303
      Fall
      3
      0
      3
      6

      Prerequisites
      None
      Course Language
      English
      Course Type
      Required
      Course Level
      First Cycle
      Mode of Delivery face to face
      Teaching Methods and Techniques of the Course Discussion
      Problem Solving
      Q&A
      Lecture / Presentation
      National Occupation Classification -
      Course Coordinator
      • Dr. Öğr. Üyesi Fatma Pınar Gördesli Duatepe
      Course Lecturer(s)
      • Dr. Öğr. Üyesi Fatma Pınar Gördesli Duatepe
      Assistant(s)
      • Araş. Gör. Mehmet Serdar Çakan
      Course Objectives The objective of this course is to provide information about basic fluid mechanics and fluid transport in biological systems, to analyze the equations of momentum and mass transport at the molecular and macroscopic levels, and to apply basic principles in solving problems.
      Learning Outcomes
      #
      Content
      PC Sub
      * Contribution Level
      1
      2
      3
      4
      5
      1Define the fluid behavior and key fluid properties,2x
      2Determine pressure changes in biological systems via the principles of fluid mechanics,1.3x
      3Compare momentum and mass transport at the molecular and macroscopic levels,2x
      4Apply the equations of momentum and mass transport in solving problems,1.6x
      5Design a project that can offer a solution to a problem encountered in fundamental transport events in biological systems.3.1x
      Course Description This course covers the key properties of fluids, pressure changes in fluid motion, fluid transport in circulation, applications of Bernoulli's principle in biological systems, equations of momentum and mass transport, diffusion and convection.
      Related Sustainable Development Goals

       



      Course Category

      Core Courses
      X
      Major Area Courses
      Supportive Courses
      Media and Management Skills Courses
      Transferable Skill Courses

       

      WEEKLY SUBJECTS AND RELATED PREPARATION STUDIES

      Week Subjects Related Preparation Learning Outcome
      1 Introduction to biotransport and fundamental concepts. Transport Phenomena in Biological Systems, 2nd Edition - Chapter 1
      2 Properties of fluids. Viscosity. Analysis of fluid behavior. Applications of Newton’s Law of viscosity. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 1 and 2, Introduction to Fluid Mechanics, 5th Edition– Chapter 1
      3 Surface tension and capillary action. Law of Laplace. Membrane and cortical tension. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 2, Introduction to Fluid Mechanics, 5th Edition– Chapter 1
      4 Basic pressure field equation. Pressure variation in a fluid. Static, stagnation, dynamic and total pressure. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 2, Introduction to Fluid Mechanics, 5th Edition– Chapter 2 and 3
      5 Elementary fluid dynamics and its biological and medical applications. The Bernoulli Equation. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 3, 4 and 5, Introduction to Fluid Mechanics, 5th Edition– Chapter 3
      6 Fluid flow in the circulation. Fundamentals of momentum transport. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 3, 4 and 5, Introduction to Fluid Mechanics, 5th Edition– Chapter 5 and 8
      7 Conservation relations and applications of momentum transport. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 3, 4 and 5, Introduction to Fluid Mechanics, 5th Edition– Chapter 5 and 8
      8 Midterm
      9 Finite control volume analysis. Fundamentals of mass transport. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 5 and 6, Introduction to Fluid Mechanics, 5th Edition– Chapter 5
      10 Conservation of mass. The continuity equation. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 5 and 6, Introduction to Fluid Mechanics, 5th Edition– Chapter 5
      11 Diffusion and convection. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 6, 7 and 8
      12 Transport in porous media. Transport Phenomena in Biological Systems, 2nd Edition – Chapter 6, 7 and 8
      13 Mass transport and biochemical interactions. Transport Phenomena in Biological Systems, 2nd Edition- Chapter 10
      14 Transport of drugs and macromolecules in tumors. Transport Phenomena in Biological Systems, 2nd Edition- Chapter 15
      15 Semester Review
      16 Final exam

       

      Course Notes/Textbooks

      ‘‘Transport Phenomena in Biological Systems’’, (2nd Edition) by George A Truskey, Fan Yuan, David F. Katz. Pearson Prentice Hall Bioengineering, 2010.

      Suggested Readings/Materials

      ‘‘Introduction to Fluid Mechanics’’, (5th Edition) by Donald, F. Young, Bruce, R. Munson, Theodore H. Okiishi, and Wade W. Huebsch. John Wiley & Sons, New York, USA, 2011.

       

      ‘‘Transport Phenomena’’, (2nd Edition) by R. Byron Bird, Warren E. Stewart, Edwin N. Lightfoot. John Wiley & Sons, Inc., 2002.

       

       ‘‘Biological and Bioenvironmental Heat and Mass Transfer’’, by Datta, AK., 2002.

       

      EVALUATION SYSTEM

      Semester Activities Number Weigthing LO 1 LO 2 LO 3 LO 4 LO 5
      Participation
      Laboratory / Application
      Field Work
      Quizzes / Studio Critiques
      Portfolio
      Homework / Assignments
      1
      10
      XXX
      Presentation / Jury
      Project
      1
      20
      X
      Seminar / Workshop
      Oral Exams
      Midterm
      1
      30
      XX
      Final Exam
      1
      40
      XXXX
      Total
      22222

      Weighting of Semester Activities on the Final Grade
      3
      60
      Weighting of End-of-Semester Activities on the Final Grade
      1
      40
      Total

      ECTS / WORKLOAD TABLE

      Semester Activities Number Duration (Hours) Workload
      Theoretical Course Hours
      (Including exam week: 16 x total hours)
      16
      3
      48
      Laboratory / Application Hours
      (Including exam week: '.16.' x total hours)
      16
      0
      Study Hours Out of Class
      14
      2
      28
      Field Work
      0
      Quizzes / Studio Critiques
      0
      Portfolio
      0
      Homework / Assignments
      1
      14
      14
      Presentation / Jury
      0
      Project
      1
      25
      25
      Seminar / Workshop
      0
      Oral Exam
      0
      Midterms
      1
      30
      30
      Final Exam
      1
      35
      35
          Total
      180

       

      COURSE LEARNING OUTCOMES AND PROGRAM QUALIFICATIONS RELATIONSHIP

      #
      PC Sub Program Competencies/Outcomes
      * Contribution Level
      1
      2
      3
      4
      5
      1

      To have adequate knowledge in Mathematics, Science and Genetics and Bioengineering; to be able to use theoretical and applied information in these areas on complex engineering problems.

      -
      X
      -
      -
      -
      2

      To be able to identify, define, formulate, and solve complex Genetics and Bioengineering problems; to be able to select and apply proper analysis and modeling methods for this purpose.

      -
      -
      -
      X
      -
      3

      To be able to design a complex system, process, device or product under realistic constraints and conditions, in such a way as to meet the requirements; to be able to apply modern design methods for this purpose.

      -
      -
      -
      X
      -
      4

      To be able to devise, select, and use modern techniques and tools needed for analysis and solution of complex problems in Genetics and Bioengineering applications; to be able to use information technologies effectively.

      -
      -
      -
      -
      -
      5

      To be able to design and conduct experiments, gather data, analyze and interpret results for investigating complex engineering problems or Genetics and Bioengineering research topics.

      -
      -
      -
      -
      -
      6

      To be able to work efficiently in Genetics and Bioengineering disciplinary and multi-disciplinary teams; to be able to work individually.

      -
      -
      -
      -
      -
      7

      To be able to communicate effectively in Turkish, both orally and in writing; to be able to author and comprehend written reports, to be able to prepare design and implementation reports, to present effectively, to be able to give and receive clear and comprehensible instructions.

      -
      -
      -
      -
      -
      8

      To have knowledge about global and social impact of Genetics and Bioengineering practices on health, environment, and safety; to have knowledge about contemporary issues as they pertain to engineering; to be aware of the legal ramifications of Genetics and Bioengineering solutions.

      -
      -
      -
      -
      -
      9

      To be aware of ethical behavior, professional and ethical responsibility; to have knowledge about standards utilized in Genetics and Bioengineering applications.

      -
      -
      -
      -
      -
      10

      To have knowledge about industrial practices such as project management, risk management, and change management; to have awareness of entrepreneurship and innovation; to have knowledge about sustainable development.

      -
      -
      -
      -
      -
      11

      To be able to collect data in the area of Genetics and Bioengineering, and to be able to communicate with colleagues in a foreign language.

      -
      -
      -
      -
      -
      12

      To be able to speak a second foreign language at a medium level of fluency efficiently.

      -
      -
      -
      -
      -
      13

      To recognize the need for lifelong learning; to be able to access information, to be able to stay current with developments in science and technology; to be able to relate the knowledge accumulated throughout the human history to Genetics and Bioengineering.

      -
      -
      -
      -
      -

      *1 Lowest, 2 Low, 3 Average, 4 High, 5 Highest


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